PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco029083.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family FAR1
Protein Properties Length: 285aa    MW: 32579.4 Da    PI: 10.5732
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco029083.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.63.6e-1731116191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  +fY++YA+e+GF v+k+++k +  +g+ t    +Cs++gk  ++ ++    r + ++ +t+C a+++v  ++d+  +++k+ leHnH+l+p
  Aco029083.1  31 NFYKHYAQEIGFAVVKRSTKMT--DGKATYVIITCSRHGKMYRTVTN---IRPRPSVAKTNCPARINVVINTDSSCVISKITLEHNHTLSP 116
                  6***************998887..9999*************999877...77788899******************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1431116IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDEERNSEVR DVNISAPEIG MTFINFDAVL NFYKHYAQEI GFAVVKRSTK MTDGKATYVI  60
ITCSRHGKMY RTVTNIRPRP SVAKTNCPAR INVVINTDSS CVISKITLEH NHTLSPYKSR  120
FFPCNRVIDT SVKRRLDLND RAGIRLNKSF NSILQEKEIE QEHELQHGGK QQALEHLSGP  180
DPEAQVRTLP AYHAERTYGV RILKLRSGPS LRIRKYMVRV PDREAQVRTL SAYHADRTYG  240
VWILKLRSGP SLRIRKYMVR VPDREAQVRT LSAYHKKGPT RSGS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1605657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.31e-11FAR1-related sequence 2